Helminths often occupy defined niches in the gut of their definitive hosts. In the dioecious acanthocephalans, adult males and females usually have similar gut distributions, but sexual site segregation has been reported in at least some species. We studied the intestinal distribution of the acanthocephalan Echinorhynchus borealis von Linstow, 1901 (syn. of E. cinctulus Porta, 1905) in its definitive host, burbot (Lota lota Linnaeus). Over 80% of female worms were found in the pyloric caeca, whereas the majority of males were in the anterior two-thirds of the intestine. This difference was relatively consistent between individual fish hosts. Worms from different parts of the gut did not differ in length, so site segregation was not obviously related to worm growth or age. We found proportionally more males in the caeca when a larger fraction of the females were found there, suggesting mating opportunities influence gut distribution. However, this result relied on a single parasite infrapopulation and is thus tentative. We discuss how mating strategies and/or sexual differences in life history might explain why males and females occupy different parts of the burbot gut.